Connexion

Recherche & téléchargement de données bioinformatiques


Connexion

Lancement d'outils et de jobs


BD



La plateforme LifeGrid propose de fédérer l’ensemble des acteurs scientifiques auvergnats (laboratoires publics et privés, entreprises) par la création d’un système d’information régional qui assurera l'organisation, le stockage et la diffusion des données issues des travaux de recherche.

Bases de données Nucleiques


rebaseThe Restriction Enzyme Database is a collection of information about restriction enzymes and related proteins. It contains published and unpublished eferences, recognition and cleavage sites, isoschizomers, commercial availability, ethylation sensitivity, crystal and sequence data. DNA methyltransferases, homing endonucleases, nicking enzymes, specificity subunits and control proteins are also included. Most recently, putative DNA methyltransferases and restriction enzymes, as predicted from analysis of genomic sequences, are also listed.
goThe GO project has developed three structured controlled vocabularies (ontologies) that describe gene products in terms of their associated biological processes, cellular components and molecular functions in a species-independent manner. There are three separate aspects to this effort: first, the development and maintenance of the ontologies themselves; second, the annotation of gene products, which entails making associations between the ontologies and the genes and gene products in the collaborating databases; and third, development of tools that facilitate the creation, maintenance and use of ontologies. The file loaded is go_20080720-assocdb.rdf-xml.gz. For mor information : http://www.geneontology.org/GO.format.shtml#RDF-XML
epdThe Eukaryotic Promoter Database is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis.

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